Scientist Profile

Details of Research Publications (National + International)

Author Names Topic Journal Name Volume Number Issue Number Page Number Year Published Impact Factor
Prakash Saudagar and Vikash Kumar DubeyCarbon Nanotube Based Betulin Formulation shows better efficacy against Leishmania parasite .Parasitology International63772-7762014
Prakash Saudagar, Shyam Lal Mudavath, Pipas Saha, Anil K. Saikia, Shyam Sundar and Vikash Kumar DubeyIn vivo assessment of antileishmanial property of 4-(4,4,8-Trimethyl-7-oxo-3-oxabicyclo[3.3.1]non-2-yl)-benzoic acid methyl ester, an oxabicyclo[3.3.1]nonanones. Letters in Drug Design and Discovery11937-9392014
Vidhyadhar N, Sushant Singh, Abhay N Singh, Vikash Kumar DubeyProcerain B, a cysteine protease from Calotropis Procera, requires N-terminus pro-region for activity: cDNA cloning and expression with pro-sequence. Protein Expression and Purification103C16-222014
Saravanan Parameswaran, Prakash Saudagar, Vikash Kumar Dubey, Sanjukta Patra.Discovery of novel anti-leishmanial agents targeting LdLip3 lipase.Journal of Molecular Graphics and Modelling4968–792014
Saravanan Parameswaran, Vikash Kumar Dubey, Sanjukta Patra.Emulating structural stability of Pseudomonas mendocina lipase: in silico mutagenesis and moleular dynamics studies.Journal of Molecular Modeling2025012014
Mousumi Das, Saudagar Prakash, Shyam Sundar and Vikash Kumar DubeyMiltefosine unresponsive Leishmania donovani has better ability of resist reactive oxygen species.FEBS Journal2804807–48152013
Saudagar Prakash, Pipas Saha , Anil K. Saikia and Vikash Kumar DubeyMolecular mechanism underlying antileishmanial effect of oxabicyclo[3.3.1]nonanones: Inhibition of key redox enzymes of the pathogen.European Journal of Pharmaceutics and Biopharmaceutics85569-5772013
Sudipta Hazra, Subhalakshmi Ghosh, Madhushree Das Sarma, Mousumi Das, Saudagar Prakash, Vikash Kumar Dubey, Shyam Sundar, Banasri Hazra Evaluation of a diospyrin derivative as antileishmanial agent and potential modulator of ornithine decarboxylase of Leishmania donovani. Experimental Parasitology135407-4132013
Nandini Sarkar and Vikash Kumar DubeyExploring critical determinants of protein amyloidogenesis: A reviewJournal of Peptide Science19529-5362013
Sushant Singh, Abhay Narayan Singh, Anil Verma and Vikash Kumar DubeyBiodegradable Polycaprolactone (PCL) Nanosphere Encapsulating Superoxide Dismutase and Catalase Enzymes.Applied Biochemistry and Biotechnology1711545-15582013
Sushant Singh, Abhay Narayan Singh, Anil Verma and Vikash Kumar DubeyA novel superoxide dismutase from Cicer arietinum L. seedlings: purification and characterization.Protein and Peptide Letters20741-7482013
Sonali Seth, Debamitra Chakrovorty, Vikash Kumar Dubey and Sanjukta PatraAn insight into plant lipase research – challenges encountered. Protein Expression and PurificationProtein Expression and Purification95C13-212013
N. K. Prasanna Kumari, Vikash Kumar Dubey and Medicherla V. JagannadhamSDS Induced Refolding of Pre-molten Globule State of Cryptolepain: Differences in Chemical and Temperature-Induced Equilibrium Unfolding of the Protein in SDS-Induced State.Biological Sciences8371-802013
Rajiv K. Verma, Vijay K. Prajapati, Girijesh K. Verma, Deblina Chakraborty, Shyam Sundar, Madhukar Rai, Vikash Kumar Dubey* and Maya Shankar Singh.Molecular Docking and in vitro Antileishmanial Evaluation of Chromene-2-thione Analogues.ACS Medicinal Chemistry Letters3243-2472012
Anil K Shukla, Sanjukta Patra and Vikash Kumar DubeyPEGylated nanospheres encapsulating antileishmanial drugs for their specific macrophage targeting, reduced toxicity and deliberate intracellular release.Vector-Borne and Zoonotic Diseases12953-9602012
Anil K Shukla, Sanjukta Patra and Vikash Kumar DubeyNyctanthes arbortristis results in increased Reactive Oxygen Species and cellular redox homeostasis imbalance in Leishmania parasite.European Journal of Medicinal Chemistry5449-582012
Neha Sharma, Anil Kumar Shukla, Mousumi Das and Vikash Kumar DubeyEvaluation of plumbagin and its derivative as potential modulator of redox thiol metabolism of Leishmania parasite. Parasitology Research110341-3482012
Abhinav Grover, Shashank Prakash Katiyar, Jeyaraman Jeyakanthan, Vikash Kumar Dubey and Durai Sundar.Blocking protein kinase C signaling pathway: mechanistic insights into the anti-leishmanial activity of prospective herbal drugs from Withania somnifera.BMC Genomics137
Ruchika Bhardwaj, Prakash Saudagar and Vikash Kumar DubeyNanobiosciences: A contemporary line for Antiparasitic Drug.Molecular and Cellular Pharmacology497-103 2012
Deblina Chakraborty, Parameswaran Saravanan, Sanjukta Patra and Vikash Kumar DubeyStudies on ornithine decarboxylase of Leishmania donovani: Structure modeling and inhibitor docking.Medicinal Chemistry Research167439-4612012
Parameswaran Saravanan, Vikash Kumar Dubey and Sanjukta PatraTargeting essential cell wall lipase Rv3802c for potential therapeutics against tuberculosis.Journal of Molecular Graphics and Modelling38235-2422012
Manjeet Kumar, Nandini Sarkar, and Vikash Kumar DubeyEvaluating quinacrine as a potential amyloid imaging compound: studies on hen egg white lysozyme as model system.Protein and Peptide Lett.19826-8312012
Abhinav Grover, Sushil Kumar Shakyawar, Saudagar Prakash, Vikash Kumar Dubey and Durai SundarEpitopic analysis of potential vaccine candidate in Leishmania infantum for development of human vaccine.Letters in Drug Design and Discovery9698-7052012
Abhinav Grover, Shashank Prakash Katiyar, Jeyaraman Jeyakanthan, Vikash Kumar Dubey and Durai Sundar.Mechanistic insights into the dual inhibition strategy for checking leishmaniasis.Journal of Biomolecular Structure & Dynamics30474-4872012
Sushant Singh, Anil Verma and Vikash Kumar DubeyAluminium induced oxidative stress in germinating chickpea ( Cicer arietinum L.) seeds.Brazilian Journal of Plant Physiology2447-542012
Parameswaran Saravanan, Vikash Kumar Dubey, Sanjukta Patra. Potential Selective Inhibitors against Rv0183 of Mycobacterium tuberculosis Targeting Host Lipid Metabolism.Chemical Biology & Drug Design791056-10622012
Debamitra Chakravorty, Parameswaran Saravanan, Vikash Kumar Dubey, Sanjukta Patra.Unraveling the rationale behind organic solvent stability of lipases.Applied Biochemistry and Biotechnology167439-4612012
Abhinav Grover, Shashank Prakash Katiyar, Sanjeev Kumar Singh, Vikash Kumar Dubey and Durai SundarA Leishmaniasis study: structure-based screening and molecular dynamics mechanistic analysis for discovering potent inhibitors of spermidine synthase.Biochimica et Biophysica Acta - BBA: Proteins and Proteomics18241476-14832012
Saudagar Prakash and Vikash Kumar DubeyCloning, expression, characterization, and inhibition studies on trypanothione synthetase, a drug target enzyme, from Leishmania donovani.Biological Chemistry3921113-11222011
Nandini Sarkar; Manjeet Kumar; Vikash Kumar DubeyRottlerin dissolves pre-formed protein amyloid: A study on hen egg white lysozyme. Biochimica et Biophysica Acta-General Subjects1810809-8142011
Abhay Narayan Singh, Neeraj Suthar, Sushant Singh, and Vikash Kumar DubeyGlutaraldehyde activated chitosan matrix for immobilization of a novel cysteine protease, procerain B.Journal of Agricultural and Food Chemistry596256-52622011
Nandini Sarkar, Manjeet Kumar and Vikash Kumar DubeyEffect of sodium tetrathionate on amyloid fibril: Insight in to the role of disulfide bond in amyloid progressionBiochimie93962-9682011
Nandini Sarkar, Manjeet Kumar and Vikash Kumar DubeyExploring possibility of promiscuity of amyloid inhibitor: Studies on effect of selected compounds on folding and amyloid formation of proteins.Process Biochemistry461179-11852011
Anil K Shukla, Sanjukta Patra and Vikash Kumar DubeyEvaluation of selected antitumor agents as subversive substrate and potential inhibitor of trypanothione reductase: An alternative approach for chemotherapy of LeishmaniasisMolecular and Cellular Biochemistry352261-2702011
Anil K Shukla, Sanjukta Patra and Vikash Kumar DubeyDeciphering molecular mechanism underlying antileishmanial activity of Nyctanthes arbortristis, an Indian medicinal plant.Journal of Ethnopharmacology134996-9982011
Jihun Lee, Sachiko I. Blaber, Vikash K. Dubey and Michael BlaberA polypeptide "building block" for the -trefoil fold identified by "top-down symmetric deconstruction.Journal of Molecular Biology407744-7632011
Bankapallai Leela Krishna, Abhay Narain Singh, Sanjukta Patra* and Vikash Kumar DubeyPurification, characterization and immobilization of urease from Momordica charantia seedsProcess Biochemistry461486-14912011
Abhay Narain Singh and Vikash Kumar DubeyExploring applications of procerain B, a novel protease from Calotropis procera, and characterization by N-terminal sequencing as well as peptide mass fingerprinting.Applied Biochemistry and Biotechnology164573-5802011
Anil K Shukla, Sanjukta Patra; Vikash Kumar DubeyBiophysical and folding parameters of trypanothione reductase from Leishmania infantumApplied Biochemistry and Biotechnology16513-232011
Santhosh K. Venkatesan, Prakash Saudagar and Vikash Kumar DubeyIdentification of novel inhibitor of Trypanothione synthtase from two Leishmania species: comparative in silico analysis.Journal of Proteins and Proteomics241-482011
Neeraj Suthar and Vikash Kumar DubeyIn silico approach to counter Leishmania donovani by targeting cysteine protease B : Structure modeling and inhibitor docking.Global Journal of Biochemistry249-582011
Santhosh K. Venkatesan, Prakash Saudagar, Anil Kumar Shukla and Vikash Kumar DubeyScreening natural products database for identification of potential antileishmanial chemotherapeutic agents.Interdisciplinary Sciences: Computational Life Sciences31-152011
Parameswaran Saravanan, Santhosh K. Venkatesan, C Gopi Mohan, Sanjukta Patra* and Vikash Kumar DubeyMitogen-activated protein kinase 4 of Leishmania parasite as a therapeutic target.European Journal of Medicinal Chemistry455662-56702010
Debamitra Chakravorty, Parameswaran Saravanan, Vikash Kumar Dubey and Sanjukta Patra.In Silico Characterization of Thermostable Lipases.Extremophiles1589-1032011
Sushil Kumar Shakyawar, Arun Goyal, Vikash Kumar DubeyGenome analysis of selected foodborne pathogens for identification of drug targets.Current Trends in Biotechnology and Pharmacy51134-11482011
Sushil Kumar Shakyawar, Arun Goyal, Vikash Kumar DubeyDatabase of in silico Predicted Potential Drug Target Proteins in Common Bacterial Human Pathogens.American Journal of Drug Discovery and Development170-742011
Praveen Kumar#, Sushant Singh# and Vikash Kumar DubeyEffect of Arsenic stress on Vigna radiate: A Biochemical studies.International Journal of Environmental Science and Engineering Research11-142010
Parameswaran Saravanan, Vikash Kumar Dubey and Sanjukta PatraIn silico characterization of thermoactive, alkaline and detergent-stable lipase from a Staphylococcus aureus strain.In Silico Biology10265–2762010
Santhosh Kannan, Anil Kumar Shukla and Vikash Kumar DubeyMolecular docking studies of selected tricyclic and quinone derivatives on trypanothione reductase of Leishmania infantum.Journal of Computational Chemistry312463-24722010
Alka Dwevedi, Vikash Kumar Dubey, Medicherla V. Jagannadham, Arvind M. KayasthaInsights into pH-Induced Conformational transition of b-Galactosidase from Pisum sativum leading to its Multimerization.Applied Biochemistry and Biotechnology1622294-23122010
Abhay Narain Singh, Anil Kumar Shukla, M.V. Jagannadham and Vikash Kumar DubeyPurification of a novel cysteine protease, procerain B, from Calotropis procera with distinct characteristics compared to procerain.Process Biochemistry45399-4062010
Nandini Sarkar and Vikash Kumar DubeyProtein nano-fibrilar structure and associated diseases.Current Proteomics7116-1202010
Anil K Shukla, Bishal K Singh, Sanjukta Patra, Vikash Kumar DubeyRational approaches for drug designing against leishmaniasis.Applied Biochemistry and Biotechnology1602208-22182010
Nandini Sarkar, Abhay Narain Singh and Vikash Kumar DubeyEffect of curcumin on amyloidogenic property of molten globule like intermediate state of 2,5-Diketo-D-Gluconate Reductase A.Biological Chemistry3901057-10612009
Neeraj Suthar, Arun Goyal and Vikash Kumar DubeyIdentification of potential drug targets of Leishmania Infantum by in-silico genome analysis.Letters in Drug Design and Discovery6620-6222009
Bishal Kumar Singh and Vikash Kumar DubeyIn silico studies on tryparedoxin peroxidase of Leishmania infantum: Structural aspects. Current Pharmaceutical Biotechnology10626-6302009
Syed Baquer Rizvi , Anil Kumar Shukla and Vikash Kumar DubeyA Simple method based on multiple alignment and phylogeny to derive a correlation between the protein fold and sequence via motif search.Interdisciplinary Sciences: Computational Life Sciences1235-2432009
Nandini Sarkar Pramod Kumar Srivastava and Vikash Kumar DubeyUnderstanding the Language of Vitamin C.Current Nutrition & Food Science553-552009
Vikash Kumar DubeyStructural Genomics on Membrane Proteins.Applied Biochemistry and Biotechnology1571112009
Anil Kumar Shukla, Utapl Bora and Vikash K. DubeyFunctional Adaptations in Fibroblast Growth Factor (FGFs) Family.Journal of Proteins and Proteomics111-132009
Naresh Kasoju , Shahin Sharif Ali, Vikash Kumar Dubey and Utpal BoraExploiting the potential of Collagen as a Natural Biomaterial in Drug Delivery.Journal of Proteins and Proteomics131-362009
Ritu Tomar, Vikash Kumar Dubey,* and M.V. JagannadhamBiophysical characterization and folding studies of plant protease, Wrightin: identification folding intermediate under different conditions.The Protein Journal28213-2232009
Monu Pande, N K Prasanna Kumari, Vikash Kumar Dubey*, Pinky Tripathi, and M.V. JagannadhamStability and Unfolding Studies on Alkaline Denatured State (Ip) of Pepsin.Process Biochemistry44906-9112009
Ritu Tomar, Vikash Kumar Dubey, and M.V. JagannadhamEffect of Alkyl Alcohols on partially unfolded state of Proteinase K: differential stability of alpha-helix and beta-sheet rich regions of the enzyme.Biochimie91951-9602009
Bishal K. Singh, Nandini Sarkar, M.V. Jagannadham and Vikash K. DubeyModeled Structure of Trypanothione Reductase of Leismania infantum.J Biochem Mol Biol.41444-4472008
Vikash K Dubey* and M.V JagannadhamRoles for cavities in protein structure: New insights.Current Proteomics5157-1602008
Bishal K. Singh, Nandini Sarkar and Vikash K. DubeyModeled Structure of Trypanothione synthetase of Leishmania infantum for development of novel therapeutics for leishmaniasis.Current Trends in Biotechnology and Pharmacy2390-3952008
Jihun Lee, Vikash K Dubey, Liam M Longo, Michael BlaberLogical OR Redundancy within the Asx-Pro-Asx-Gly Type I b-turn Motif.Journal of Molecular Biology3771251-12642008
Vikash K. Dubey*, Bishal K Singh, Nandini Sarkar, Monu Pande and M.V Jagannadham.Biophysical characterization of Fibroblast Growth Factor homologous Factor-1b (FHF-1b): Sodium dodecyl sulfate promotes two state folding.Protein and Peptide Lett.15215-2182008
Vikash K. Dubey*, Monu Pande, Bishal Kumar Singh and Medicherla V. JagannadhamRealm of Papain-Like Proteases: Applications of their Inhibitors.African Journal of Biotechnology61077-10862007
Vikash Kumar Dubey, Jihun Lee, Thayumana Somasundaram, Sachiko Blaber and Michael Blaber.Spackling the crack: stabilizing human fibroblast growth factor-1 by targeting the N- and C-termini b-strand interactions.Journal of Molecular Biology371256-2682007
Sreedevi Nallamsetty, Vikash K. Dubey, Monu Pande, P. K. Ambasht and M.V. JagannadhamAccumulation of partly folded states in the equilibrium unfolding of ervatamin A: Spectroscopic description of the native, intermediate, and unfolded states. Biochimie891416-242007
Monu Pande, Vikash Kumar Dubey, Vishal Sahu and M.V. JagannadhamConformational Plasticity of Cryptolepain: Accumulation of Partially Unfolded States in Denaturants induced Equilibrium Unfolding.Journal of Biotechnology131404-4142007
Monu Pande, Vikash K. Dubey, and Medicherla V. JagannadhamCrystallization and preliminary x-ray analysis of cryptolepain: A novel glycosylated serine protease from Cryptolepis buchanani.Acta CrystallographicaF6374-772007
Jihun Lee, Vikash Kumar Dubey, Thayumanasamy Somasundaram and Michael BlaberConversion of type I 4:6 to 3:5 ?-turn types in human acidic fibroblast growth factor: Effects upon structure, stability, folding, and mitogenic function.Proteins: Structure Function Bioinformatics62686-6972006
Monu Pande, Vikash K. Dubey, Subhash Chandra Yadav and Medicherla V. JagannadhamA Novel Serine Protease Cryptolepain, from Cryptolepis buchanani: Purification and Biochemical Characterization. Journal of Agricultural and Food Chemistry (ACS)2710141-101502006
Vikash Kumar Dubey, Monu Pande and M.V. JagannadhamSnapshots of Protein Folding Problem: Implications of Folding and Misfolding Studies.Protein and Peptide Lett.13883- 8882006
Vikash K. Dubey, Ashu Saha, M.V. Jagannadham and A.M. KayasthaEffect of Organic solvent on molten globule state of procerain: b-sheet to l-helix switchover in presence of TFE.Protein and Peptide Lett.13545-5472006
Vikash K. Dubey, Jihun Lee, and Michael BlaberRedesigning Symmetry-Related "Mini-Core" Regions of FGF-1 to Increase Primary Structure Symmetry: Thermodynamic and Functional Consequences of Structural Symmetry.Protein Science142315-23232005
Carlo Travaglini-Allocatelli, Stefano Gianni, Vikash K. Dubey, Alessandro Borgia, Adele Di Matteo, Daniele Bonivento, Francesca Cutruzzola, Kara L. Bren, Maurizio Brunori.An obligatory intermediate in the folding pathway of cyctochrome C552 from Hydrogenobacter thermophilus.J. Biol Chem.28025729-257342005
Stephen R. Brych, Vikash K. Dubey, Ewa Bienkiewicz, Jihun Lee, Timothy M. Logan and Michael BlaberSymmetric primary and tertiary structure mutations within a symmetric superfold: A solution and not a constraint to achieving a foldable polypeptide?Journal of Molecular Biology344769-7802004
Monica Sundd, Suman Kundu, Vikash Kumar Dubey and M.V. JagannadhamUnfolding of ervatamin C in the presence of organic solvents: Sequential unfolding of the protein in O-state.Journal of Biochemistry and Molecular Biology37586-5962004
Vikash Kumar Dubey and M.V. JagannadhamDifferences in the unfolding of procerain induced by pH, GuHCl, urea and temperature.Biochemistry (ACS)4212287-122972003
Vikash Kumar Dubey and M.V. JagannadhamProcerain, a stable cysteine protease from Calotropis proceraPhytochemistry621057-10712003


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